Computer Lab (Modeling and Simulation of Biological Systems)

Teaching Assistant (CS/BE/CS&B/EEB M186/286/178), UCLA, Computational and Systems Biology, 2018

Development of computer labs for students to practice, improve, and master modeling and simulating biological systems, e.g. Lokta-Volterra predator-prey model, Michaelis Menten Model, Hodgkin-Huxley Model, SIR model, and etc…

List of labs for the session:

  • Lab1: Introduction to Matlab and review on Difference Equation.
  • Lab2: Effect of various impulse inputs on the dynamics of ODE.
  • Lab3: Eigenvalues.
  • Lab4: Numerical Methods for solving ODE.
  • Lab5: Matlab tutorial.
  • Lab6: Michaelis Menten.
  • Lab7: Hodgkin-Huxley.
  • Lab8: Network.
  • Lab9: SIRS Model.
  • Lab10: Fractal.
  • Lab11: Julia (programming language) tutorial.